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About Us – Center for Algorithmic Biotechnology
The Center for Algorithmic Biotechnology is a part of the Institute of Translational Biomedicine SPbU. We are working on projects in the areas of genomics, transcriptomics, antibiotics discovery and c...
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SPAdes – Center for Algorithmic Biotechnology
2582 A5 and CLC 3.22.55708 were run with default parameters. ABySS 1.3.5, EULER-SR 2.0.1, Ray 2.2.0, SOAPdenovo 2.04, Velvet 1.2.07, and E+V-SC were run with vertex size 55. IDBA-UD 1.1.0 was run in i...
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Research – Center for Algorithmic Biotechnology
Originally, we have developed a de novo genome assembler tool called SPAdes for the purpose of overcoming the complications associated with single-cell microbial data generated using MDA. Later, SPAd...
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Software – Center for Algorithmic Biotechnology
8 (812) 363-60-42
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BinSPreader – Center for Algorithmic Biotechnology
Description BinSPreader is a novel tool that attempts to refine metagenome-assembled genomes (MAGs) obtained from existing tools. BinSPreader exploits the assembly graph topology and other connectivit...