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Becoming theory-strong, at least stronger (Exercise 1) – Statistical Biophysics Blog
With this post I want to begin a series of exercises designed to grow your strength in theory pertinent to statistical biophysics – i.e., in math, physics, theoretical chemistry. The goal is to help ...
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From continuous to discrete time (Exercise 7) – Statistical Biophysics Blog
Give yourself a pat on the back if you’ve come this far. You have used simple exact solutions to differential equations to grasp the essentials of non-equilibrium processes. But there’s the physical...
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Statistical Biophysics Blog – Page 2 – Statistical mechanics in biology and biocomputation
This is yet another one of those things where, after reading this, you’re supposed to say, “Oh, that’s obvious.” And I admit it is kind of obvious … after you think about it for a few minutes! So sp...
- Exercises – Statistical Biophysics Blog
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Non-equilibrium physics – Statistical Biophysics Blog
I don’t about you but I grew up on equilibrium statistical mechanics. The beauty of a partition function, an ensemble, the ability to understand thermodynamic principles from microscopic rules. I l...
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So you want to do some path sampling… – Statistical Biophysics Blog
Basic strategies, timescales, and limitations Key biomolecular events – such as conformational changes, folding, and binding – that are challenging to study using straightforward simulation may be ame...